Difference between revisions of "Shelter measurements"

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=Quick summary=
 
=Quick summary=
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[[file:basement_1d_2d.png|thumb|250px|Figure 1: Combination of 1D and 2D models in BASEMENT (source: VAW).]]
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[[file:shelter_measurements_salmon.png|thumb|500px|Figure 1: Juvenile salmon in the upper layers of river bed sediment (Forseth et al., 2014).]]
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[[file:basement_gui.png|thumb|250px|Figure 2: Graphical user interface of BASEMENT (source: VAW) (click to enlarge).]]
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[[file:shelter_measurements_shelter_tube.png|thumb|250px|Figure 2: Example showing hiding depth of 2cm (first marker covered) on a tube (Forseth et al., 2014).]]
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[[file:basemet_qgis.png|thumb|250px|Figure 3: Visualization of BASEMENT results with QGIS plugin Crayfish (source: VAW) (click to enlarge).]]
 
  
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Developed by: A. G. FINSTAD
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Developed by: A. G. Finstad
  
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Date:  
+
Date: -
  
 
Type: [[:Category:Methods|Method]]
 
Type: [[:Category:Methods|Method]]
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Suitable for the following [[::Category:Measures|measures]]:
 
  
 
=Introduction=
 
=Introduction=
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The technique was developed by Finstad to estimate the shelter availability for juvenile salmon (Finstad et al. 2007a). In this stage of their life cycle, the salmon seeks shelter in the free spaces of the upper layers of the river bed sediment (Figure 1). The existence and size of such openings to be used as shelter is measured with the described technique. It is relatively easy to be carried out in the field. The method is based on the idea to mimic the small fish by using a plastic tube which has the approximate diameter of such a fish.  
+
The technique was developed by Finstad to estimate the shelter availability for juvenile salmon (Finstad et al. 2007a). In this stage of their life cycle, the salmon seeks shelter in the free spaces of the upper layers of the riverbed sediment (Figure 1). The existence and size of such openings to be used as shelter is measured with the described technique. It is relatively easy to be carried out in the field. The method is based on the idea to mimic the small fish by using a plastic tube, which has the approximate diameter of such a fish.  
  
−
For salmon Finstad used tubes with five different diameters (5, 10, 13, 16, 22 mm). As a result of their experiments Forseth et al. (2014) suggest the use of a 13mm tube to conduct the tests in an area of about 0.25m2. The tube is marked according to the three different shelter categories at lengths of 2, 5 and 10 cm to be able to detect certain possible hiding depths. Within the fixed framed area one is aiming to find every hole or opening where one can stick the tube into. The length of the tube (defined by the three rings) which is not visible any more, defines the potential hiding depth (Figure 2).  
+
For salmon, Finstad used tubes with five different diameters (5, 10, 13, 16, 22 mm). As a result of their experiments Forseth et al. (2014) suggest the use of a 13mm tube to conduct the tests in an area of about 0.25m<sup>2</sup>. The tube is marked according to the three different shelter categories at lengths of 2, 5 and 10 cm to be able to detect certain possible hiding depths. Within the fixed framed area one is aiming to find every hole or opening where one can stick the tube into. The length of the tube (defined by the three rings) which is not visible anymore, defines the potential hiding depth (Figure 2).  
  
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The post-processing of the data is quite simple and described in the following section.
+
The post-processing of the data is quite simple and described in the following section.  
  
−
In FIThydro this technique shall be applied also to other fish species than the salmon. Therefore we use in addition tubes with diameters of 5 mm and 8 mm.
+
The method was developed in and for Norwegian rivers with large grain sizes. It is currently (also in FIThydro) under investigation if, when using it in rivers with a smaller D50, i.e. smaller grain sizes, this relation still applies or another relation becomes relevant.  
−
These results can then be linked to the D5 and D10 grain diameter of the sediment (Szabo-Meszaros et al 2016).  
 
  
−
The method was developed in and for Norwegian rivers with large grain sizes. It is currently (also in FIThydro) under investigation if, when using it in rivers with a smaller D50, i.e. smaller grain sizes, this relation still applies or another relation becomes relevant.
+
It should further be applied also to other fish species than the salmon. Therefor additional tubes with diameters of 5 mm and 8 mm are used within the project`s measurement campaigns. These results might then be linked to the D5 and D10 grain diameter of the sediment (Szabo-Meszaros et al 2016).
  
 
=Application=
 
=Application=
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*One tube with a diameter of 13 mm and marks (rings) at 2, 5 and 10 cm
 
*One tube with a diameter of 13 mm and marks (rings) at 2, 5 and 10 cm
 
*One frame (metal or wood) to define the size of the area to be counted on
 
*One frame (metal or wood) to define the size of the area to be counted on
−
*Something to take notes
+
*Something to take notes (Laptop, paper, etc.)
  
 
The hiding depth thresholds are defined as 2, 5 and 10 cm and often named as class S1 (2 cm – 5 cm), class S2 (5 cm – 10 cm) and class S3 (> 10 cm).
 
The hiding depth thresholds are defined as 2, 5 and 10 cm and often named as class S1 (2 cm – 5 cm), class S2 (5 cm – 10 cm) and class S3 (> 10 cm).
Line 35: Line 31:
 
When all values are collected in the field, the counted numbers for the different classes / hiding depth per spot are weighted using the following empirical formula described in Forseth et al (2014):
 
When all values are collected in the field, the counted numbers for the different classes / hiding depth per spot are weighted using the following empirical formula described in Forseth et al (2014):
  
−
S1 + S2 x 2 + S3 x 3
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<math>S1+S2*2+S3*3</math>
  
 
Based on the following matrix the shelter availability can be defined:
 
Based on the following matrix the shelter availability can be defined:
  
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Table 1: shelter availability depending on the number of shelter available
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<table border="1">
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Shelter Class Low Moderate High
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<caption> Table 1: shelter availability depending on the number of shelter spots available. </caption>
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Values for weighted shelter < 5 5 – 10 > 10
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<tr style="height: 35px;">
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<td style="height: 35px; text-align: center;" width="265">
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<p>Shelter Class</p>
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</td>
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<td style="height: 35px; text-align: center;" width="76">
 +
<p>Low</p>
 +
</td>
 +
<td style="height: 35px; text-align: center;" width="76">
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<p>Moderate</p>
 +
</td>
 +
<td style="height: 35px; text-align: center;" width="76">
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<p>High</p>
 +
</td>
 +
</tr>
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<tr style="height: 35.2px;">
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<td style="height: 35.2px; text-align: center;" width="265">
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<p>Values for weighted shelter</p>
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</td>
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<td style="height: 35.2px; text-align: center;" width="76">
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<p>&lt; 5</p>
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</td>
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<td style="height: 35.2px; text-align: center;" width="76">
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<p>5 &ndash; 10</p>
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</td>
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<td style="height: 35.2px; text-align: center;" width="76">
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<p>&gt; 10</p>
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</td>
 +
</tr>
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</table>
 +
 
 +
=Relevant mitigation measures and test cases=
 +
{{Suitable measures for 3D fish tracking system}}
  
 
=Other information=
 
=Other information=
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In addition to the use on regular Windows and Linux workstations, the upcoming version 3.0 of BASEMENT (March 2019) is designed to run on graphical processing units (GPUs) and distributed memory computer clusters allowing engineers to tackle problems with very large computational domains or long simulation time.
 
  
 
=Relevant literature=
 
=Relevant literature=
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*Vetsch D., Siviglia A., Caponi F., Ehrbar D., Gerke E., Kammerer S., Koch A., Peter S., Vanzo D., Vonwiller L., Facchini M., Gerber M., Volz C., Farshi D., Mueller R., Rousselot P., Veprek R., Faeh R. 2018. System Manuals of BASEMENT, Version 2.8. Laboratory of Hydraulics, Glaciology and Hydrology (VAW). ETH Zurich. Available from http://www.basement.ethz.ch.
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*Finstad, A.G., Einum, S., Forseth, T., Ugedal, O., 2007a. Shelter availability affects behaviour, size-dependent and mean growth of juvenile Atlantic salmon. Freshwater Biology 52, 1710–1718. https://doi.org/10.1111/j.1365-2427.2007.01799.x
 +
 
 +
*Finstad, A.G., Forseth, T., Ugedal, O., Naesje, T.F., 2007b. Metabolic rate, behaviour and winter performance in juvenile Atlantic salmon. Functional Ecology 21, 905–912. https://doi.org/10.1111/j.1365-2435.2007.01291.x
 +
 
 +
*Forseth, T., Harby, A., Ugedal, O., Pulg, U., Fjeldstad, H.-P., Robertsen, G., Barlaup, B.T., Alfredsen, K., Sundt, H., Salveit, S.J., Skoglund, H., Kvingedal, E., Sundt-Hansen, L.E.B., Finstad, A., Einum, S., Arnekleiv, J.V., 2014. Handbook for environmental design in regulated salmon rivers (NINA temahefte No. 53). Norsk institutt for naturforskning, Trondheim, Norway.
  
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=Contact information=
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*Szabo-Meszaros,  Marcel, Rüther, N., Alfredsen, K., 2016. Correlation between the shelter of juvenile salmonids and bed substrate, in: Wieprecht, S., Haun, S., Weber, K., Noack, M., Terheiden, K. (Eds.), River Sedimentation: Proceedings of the 13th International Symposium on River Sedimentation (Stuttgart, Germany, 19-22 September, 2016).
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Website (download, tutorials, etc.): http://www.basement.ethz.ch
 
  
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Email: basement@ethz.ch
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*Valdimarsson, S.K., Metcalfe, N.B., 1998. Shelter selection in juvenile Atlantic salmon, or why do salmon seek shelter in winter? Journal of Fish Biology 52, 42–49. https://doi.org/10.1111/j.1095-8649.1998.tb01551.x
  
 +
=Contact information=
  
 
[[Category:Methods]]
 
[[Category:Methods]]

Latest revision as of 08:44, 30 September 2020

Quick summary

Figure 1: Juvenile salmon in the upper layers of river bed sediment (Forseth et al., 2014).
Figure 2: Example showing hiding depth of 2cm (first marker covered) on a tube (Forseth et al., 2014).

Developed by: A. G. Finstad

Date: -

Type: Method

Introduction

The technique was developed by Finstad to estimate the shelter availability for juvenile salmon (Finstad et al. 2007a). In this stage of their life cycle, the salmon seeks shelter in the free spaces of the upper layers of the riverbed sediment (Figure 1). The existence and size of such openings to be used as shelter is measured with the described technique. It is relatively easy to be carried out in the field. The method is based on the idea to mimic the small fish by using a plastic tube, which has the approximate diameter of such a fish.

For salmon, Finstad used tubes with five different diameters (5, 10, 13, 16, 22 mm). As a result of their experiments Forseth et al. (2014) suggest the use of a 13mm tube to conduct the tests in an area of about 0.25m2. The tube is marked according to the three different shelter categories at lengths of 2, 5 and 10 cm to be able to detect certain possible hiding depths. Within the fixed framed area one is aiming to find every hole or opening where one can stick the tube into. The length of the tube (defined by the three rings) which is not visible anymore, defines the potential hiding depth (Figure 2).

The post-processing of the data is quite simple and described in the following section.

The method was developed in and for Norwegian rivers with large grain sizes. It is currently (also in FIThydro) under investigation if, when using it in rivers with a smaller D50, i.e. smaller grain sizes, this relation still applies or another relation becomes relevant.

It should further be applied also to other fish species than the salmon. Therefor additional tubes with diameters of 5 mm and 8 mm are used within the project`s measurement campaigns. These results might then be linked to the D5 and D10 grain diameter of the sediment (Szabo-Meszaros et al 2016).

Application

For the measurement the following material is needed:

  • One tube with a diameter of 13 mm and marks (rings) at 2, 5 and 10 cm
  • One frame (metal or wood) to define the size of the area to be counted on
  • Something to take notes (Laptop, paper, etc.)

The hiding depth thresholds are defined as 2, 5 and 10 cm and often named as class S1 (2 cm – 5 cm), class S2 (5 cm – 10 cm) and class S3 (> 10 cm). It is recommended that the same person is carrying out the counting, to minimize the human based systematic error as much as possible.

When all values are collected in the field, the counted numbers for the different classes / hiding depth per spot are weighted using the following empirical formula described in Forseth et al (2014):

Based on the following matrix the shelter availability can be defined:

Table 1: shelter availability depending on the number of shelter spots available.

Shelter Class

Low

Moderate

High

Values for weighted shelter

< 5

5 – 10

> 10

Relevant mitigation measures and test cases

Relevant measures
Baffle fishways
Bottom-type intakes (Coanda screen, Lepine water intake, etc)
Bypass combined with other solutions
Complete or partial migration barrier removal
Fish guidance structures with narrow bar spacing
Fish lifts, screws, locks, and others
Fish-friendly turbines
Fish refuge under hydropeaking conditions
Fishways for eels and lampreys
Mitigating rapid, short-term variations in flow (hydro-peaking operations)
Nature-like fishways
Operational measures (turbine operations, spillway passage)
Other types of fine screens
Pool-type fishways
Sensory, behavioural barriers (electricity, light, sound, air-water curtains)
Skimming walls (fixed or floating)
Truck transport
Vertical slot fishways
Relevant test cases Applied in test case?
Anundsjö test case Yes
Guma and Vadocondes test cases -

Other information

Relevant literature

  • Finstad, A.G., Einum, S., Forseth, T., Ugedal, O., 2007a. Shelter availability affects behaviour, size-dependent and mean growth of juvenile Atlantic salmon. Freshwater Biology 52, 1710–1718. https://doi.org/10.1111/j.1365-2427.2007.01799.x
  • Forseth, T., Harby, A., Ugedal, O., Pulg, U., Fjeldstad, H.-P., Robertsen, G., Barlaup, B.T., Alfredsen, K., Sundt, H., Salveit, S.J., Skoglund, H., Kvingedal, E., Sundt-Hansen, L.E.B., Finstad, A., Einum, S., Arnekleiv, J.V., 2014. Handbook for environmental design in regulated salmon rivers (NINA temahefte No. 53). Norsk institutt for naturforskning, Trondheim, Norway.
  • Szabo-Meszaros, Marcel, Rüther, N., Alfredsen, K., 2016. Correlation between the shelter of juvenile salmonids and bed substrate, in: Wieprecht, S., Haun, S., Weber, K., Noack, M., Terheiden, K. (Eds.), River Sedimentation: Proceedings of the 13th International Symposium on River Sedimentation (Stuttgart, Germany, 19-22 September, 2016).

Contact information

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